When performing a remote trace, the system does not take into account your settings on the ruleset list because you are tracing a different requestor. The other target requestor you are trying to trace could have a completely different ruleset stack. Hence, PRPC will trace all rulesets of the target/remote requestor.
Well I am not aware of something like that. One alternate option could be to save the tracer dump first ( in *.xml format ) in your local system and then use tracer viewer tool to upload the same and filter it / find the rules accordingly.